|
Date
|
Topic
|
Preparation
|
Materials
|
01/20/2015
|
Modeling and Simulation Concepts
Maxima installation
|
Bring your laptop to class
|
Brainstorming exercise PDF Word
|
| 01/22/2015 |
Introduction to Maxima
R installation
|
Read Velten Chapter 1
Revise answers to brainstorming questions
Read over class materials and look at resources
|
Maxima exercises PDF Word
Resources:
Maxima software and documentation
Ted Woollett's Maxima by Example
|
| 01/27/2015 |
Quiz 1 over Chapter 1 and Chapter 2 pp. 47-60
Descriptive Statistics
Introduction to R
|
Read Velten Chapter 2 pp. 47-60
Study for Quiz 1
Read over class materials and look at resources
|
Maxima and R exercises PDF Word
Resources:
R Project website with software are documentation
Quick-R website
R Tutorial website
|
| 01/29/2015 |
Inferential Statistics:
Hypothesis Testing
|
Read Velten pp. 60-64 |
Discussion questions PDF Word
Astrophysics R Tutorial
|
| 02/03/2015 |
Hypothesis Testing (cont.)
|
|
Inferential Statistics slides PDF PPTX
normtemp.txt
yellowness.txt
|
| 02/05/2015 |
Inferential Statistics:
Regression Modeling
|
Read Velten pp. 65-87
Study for Quiz 2 on Inferential Statistics
|
Same slides as 02/03/2015
|
| 02/10/2015 |
Quiz 2
Neural Networks
|
Read Velten pp. 87-99 |
|
| 02/12/2015 |
Introduction to Mechanistic Modeling |
Read Velten pp. 117-129 |
Interactive Differential Equations -- Lab 1
Heat Transfer and Biot Number
|
| 02/17/2015 |
ODE Models and Theory |
Read Velten pp. 130-153 |
Interactive Differential Equations -- Lab 2
Quiz 3 PDF Word
|
| 02/19/2015 |
Solutions of ODEs
ODEs using MATLAB (taught by Henry Moncada)
|
Read Velten pp. 153-174 |
Limited Growth Population Model video
ODE Software for MATLAB (dfield, pplane) website
Dfield/Pplane User Manual
Phase_Portrait_Stability.pdf
critical_points.pdf
|
| 02/24/2015 |
Numerical solution of ODEs |
Read Velten pp. 174-194 |
Book software -- Euler.mac, Stiff.mac
|
| 02/26/2015 |
Numerical solution of ODEs (cont.)
Bifurcations
|
|
Book software -- MechODE/mac, MechODE/r
Bifurcations video
Interactive Differential Equations - Labs 23, 24, 25
|
| 03/03/2015 |
Fitting ODEs to Data
Predator-Prey System model
|
Read Velten pp. 194-211
|
Book software
Predator-Prey System video
Interactive Differential Equations - Lab 21
Handout
|
| 03/05/2015 |
Dynamical Systems (taught by Henry Moncada)
|
|
Predator Prey MATLAB code
|
| 03/17/2015 |
ODEPACK
|
ODEPACK webpage
LSODA documentation
Midterm Review Guide
|
|
| 03/19/2015 |
Wrapup and review
|
|
|
| 03/24/2015 |
Midterm exam |
|
|
| 03/26/2015 |
PDE Example: the Heat Equation |
Velten pp. 229-241
|
Heat Equation activity |
| 03/31/2015 |
Cesar Chavez Day -- no class |
|
|
| 04/02/2015 |
PDE Theory |
Velten pp. 241-248
PDE Playlist -- PDE 1 and PDE 2
|
Parabolic PDE exercises
|
| 04/07/2015 |
2D Heat Equation
Hyperbolic PDE: The Wave Equation
|
PDE Playlist -- PDE 7 and PDE 8 |
2D Heat Equation slides
Wave Equation slides
|
| 04/09/2015 |
Elliptic PDE -- Stationary Heat Equation |
Laplace's Equation in Other Coorindates
|
Elliptic PDE exercises
Elliptic PDE slides
|
| 04/14/2015 |
Separation of Variables method
Fourier Series Analysis
|
Velten pp. 254-257
PDE playlist -- PDE 13
PDE playlist -- FA1, FA2
|
|
| 04/16/2015 |
Numerical solution of PDEs -- Finite difference methods |
Velten pp. 257-266
|
Exercises
|
| 04/21/2015 |
Finite difference method software
|
Programs in MATLAB, C, Fortran, Python for
Time Dependent 1D Heat Equation - explicit
Time Dependent 1D Heat Equation - implicit
1D Wave Equation
|
|
| 04/23/2015 |
Finite element methods
|
Velten pp. 266-286
Intro to FEM by Sayas
FEM Solution of 2D Heat Equation using MATLAB
fem2d-matlab.tar.gz
Intro to FEM by Gilbert Strang
Intro to FEM by Jacob Bishop
|
Slides
|
| 04/28/2015 |
Introduction to the Stampede supercomputer
Introduction to PETSc
|
Stampede User Guide
PETSc Users Manual
|
PETSc Examples
ts/ex4.c -- time-dependent 1D heat equation
ksp/ex2.c -- time-independent 2D heat equation
|
| 04/30/2015 |
Stampede and PETSc exercises
|
|
stampede-petsc-exercises
|
| 05/05/2015 |
work on project and review for final exam
|
Ringler et al A multi-resolution approach to global ocean modeling
|
|
| 05/07/2015 |
work on project and review for final exam
|
|
|
Comments (1)
Shirley Moore said
at 1:19 pm on Jan 22, 2015
Be sure to do the Preparation listed for each class BEFORE that class meeting. -Dr. Moore
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