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CPS 5310 Spring 2015 Class Meetings

Page history last edited by Shirley Moore 4 years, 9 months ago

Date

Topic
Preparation
Materials
01/20/2015

Modeling and Simulation Concepts

Maxima installation

Bring your laptop to class
Brainstorming exercise  PDF  Word
01/22/2015

Introduction to Maxima

R installation

Read Velten Chapter 1

Revise answers to brainstorming questions

Read over class materials and look at resources

Maxima exercises  PDF  Word

Resources:

Maxima software and documentation

Ted Woollett's Maxima by Example

01/27/2015

Quiz 1 over Chapter 1 and Chapter 2 pp. 47-60

Descriptive Statistics

Introduction to R

Read Velten Chapter 2 pp. 47-60

Study for Quiz 1

Read over class materials and look at resources

Maxima and R exercises PDF  Word

Resources:

R Project website with software are documentation

Quick-R website

R Tutorial website

01/29/2015

Inferential Statistics:

Hypothesis Testing

Read Velten pp. 60-64

Discussion questions  PDF  Word

Astrophysics R Tutorial

02/03/2015

Hypothesis Testing (cont.)

 

Inferential Statistics slides  PDF  PPTX

   normtemp.txt

   yellowness.txt

02/05/2015

Inferential Statistics:

Regression Modeling

Read Velten pp. 65-87

Study for Quiz 2 on Inferential Statistics

Same slides as 02/03/2015
02/10/2015

Quiz 2

Neural Networks

Read Velten pp. 87-99  
02/12/2015 Introduction to Mechanistic Modeling Read Velten pp. 117-129

Interactive Differential Equations -- Lab 1

Heat Transfer and Biot Number

02/17/2015 ODE Models and Theory Read Velten pp. 130-153

Interactive Differential Equations -- Lab 2

Quiz 3  PDF  Word

02/19/2015

Solutions of ODEs

ODEs using MATLAB (taught by Henry Moncada)

Read Velten pp. 153-174

Limited Growth Population Model video

ODE Software for MATLAB (dfield, pplane) website

   Dfield/Pplane User Manual

   Phase_Portrait_Stability.pdf

   critical_points.pdf

02/24/2015 Numerical solution of ODEs Read Velten pp. 174-194

Book software -- Euler.mac, Stiff.mac

02/26/2015

Numerical solution of ODEs (cont.)

Bifurcations

 

Book software -- MechODE/mac, MechODE/r

Bifurcations video

Interactive Differential Equations - Labs 23, 24, 25

03/03/2015

Fitting ODEs to Data

Predator-Prey System model

Read Velten pp. 194-211

Book software

Predator-Prey System video

Interactive Differential Equations - Lab 21

Handout

03/05/2015

Dynamical Systems  (taught by Henry Moncada)

 
Predator Prey MATLAB code
03/17/2015

ODEPACK

 

ODEPACK webpage

LSODA documentation

Midterm Review Guide

 
03/19/2015 Wrapup and review
   
03/24/2015 Midterm exam    
03/26/2015 PDE Example: the Heat Equation Velten pp. 229-241
Heat Equation activity
03/31/2015 Cesar Chavez Day -- no class    
04/02/2015 PDE Theory

Velten pp. 241-248

PDE Playlist -- PDE 1 and PDE 2

Parabolic PDE exercises
04/07/2015

2D Heat Equation

Hyperbolic PDE: The Wave Equation

PDE Playlist -- PDE 7 and PDE 8

2D Heat Equation slides

Wave Equation slides

04/09/2015 Elliptic PDE -- Stationary Heat Equation Laplace's Equation in Other Coorindates

Elliptic PDE exercises

Elliptic PDE slides

04/14/2015

Separation of Variables method

Fourier Series Analysis

Velten pp. 254-257

PDE playlist -- PDE 13

PDE playlist -- FA1, FA2

 
04/16/2015 Numerical solution of PDEs -- Finite difference methods

Velten pp. 257-266

 

Exercises
04/21/2015 Finite difference method software

Programs in MATLAB, C, Fortran, Python for

   Time Dependent 1D Heat Equation - explicit

   Time Dependent 1D Heat Equation - implicit

   1D Wave Equation  

 
04/23/2015 Finite element methods

Velten pp. 266-286

Intro to FEM by Sayas

FEM Solution of 2D Heat Equation using MATLAB

   fem2d-matlab.tar.gz

Intro to FEM by Gilbert Strang

Intro to FEM by Jacob Bishop

Slides

 

04/28/2015

Introduction to the Stampede supercomputer

Introduction to PETSc

Stampede User Guide

PETSc Users Manual

PETSc Examples

   ts/ex4.c -- time-dependent 1D heat equation

   ksp/ex2.c -- time-independent 2D heat equation

04/30/2015 Stampede and PETSc exercises
 

stampede-petsc-exercises

 

05/05/2015 work on project and review for final exam
Ringler et al A multi-resolution approach to global ocean modeling
 
05/07/2015 work on project and review for final exam
   

 

 

Comments (1)

Shirley Moore said

at 1:19 pm on Jan 22, 2015

Be sure to do the Preparation listed for each class BEFORE that class meeting. -Dr. Moore

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