Please complete reading assignments prior to the class during which they will be discussed.

Date	Topic	Reading	Slides and Exercises
08/25/2014	Introduction to Computational Science		Intro to CPS
08/27/2014	MIcroprocessors	Eijkhout pp. 11-21	Slides (slides 1-13) Microprocessor Architecture Questions
09/03/2014	Memory Hierarchy	Eijkhout pp. 21-36	Slides (slides 14-45) Memory Hierarchy slides
09/08/2014	Multicore and the Roofline Model	Eijkhout pp. 36-47 Roofline model paper	Roofline model slides Roofline model exercises
09/10/2014	Locality and Programming for Performance	Eijkhout pp. 47-64	Exercises
09/15/2014	Programming for Performance (cont.)
09/17/2014	Introduction to C (taught by Henry Moncada)	Practical Programming in C at MIT	C Code Examples
09/22/2014	C and Performance	GNU gcc compiler optimization Cache blocking for matrix algorithms
09/24/2014	Introduction to Fortran	Fortran90 Tutorial at MTU Fortran90 Tutorial at Rice University	Fortran Intro slides
09/29/2014	Fortran90 in More Detail	Fortran90 Tutorial at MTU Arrays Modules External Subprograms and Interface Blocks
10/01/2014	Introduction to Python	Python videos at Software Carpentry
10/06/2014	NumPy and SciPy Python Scripting as glue	SciPy.org	Slides (PDF) Slides (PPTX)
10/08/2014	Python Scripting (cont.)		Handout
10/13/2014	Introduction to Parallel Computing		Slides (PDF) Slides (PPTX)
10/15/2014	Introduction to OpenMP (taught by Rogelio Long)		Slides (PPTX) Example codes: omp_hello.c omp_private.c omp_lastprivate.c omp_reduction.c omp_section.c omp_nested.c
10/20/2014	Introduction to MPI	Introduction to MPI at www.citutor.org sections 1, 2, 3	Exercises 1.5, 1.6, 2.8, 2.9
10/22/2014	MPI Point-to-Point Communication and Derived Datatypes	Introduction to MPI at www.citutor.org sections 4, 5 (omit 5.4.2, 5.4.3, 5.4.5)	Exercises 4.8, 5.5
10/27/2014	Group work on Lab 3
10/29/2014	MPI Collective Communication and Topologies	Introduction to MPI at www.citutor.org sections 6, 7, 8
11/03/2014	Parallel Matrix Operations using MPI		Slides (PDF) Slides (PPT)
11/05/2014	Cartesian Topologies Cannon's Matrix Multiplication Algorithm
11/10/2014	UTEP Research Cloud Batch Queuing Systems
11/12/2014	Speedup and Scalability	Eijkhout 2.7.3 and 2.7.4 (online version)	Slides (PDF) Slides (PPTX)
11/17/2014	Review		Review guide
11/19/2014	Midterm Exam
11/24/2014	Computer Arithmetic Numerical Linear Algebra Dense Linear Algebra Libraries	Eijkhout Numerical Computing with MATLAB	Computer Aritmetic slides Numerical Linear Algebra slides Dense Linear Algebra Libraries slides
11/26/2014	Using LAPACK	LAPACK exercises
12/01/2014	Numerical Sparse Linear Algebra	Eijkhout Conjugate Gradients without the Agonizing Pain by Jonathan Skewchuk	sparse slides Direct and Iterative methods PETSc tutorial
12/03/2014	Review for Final		Test 1 Answers Additional Practice Problems (PDF) (Word version)

CPS5401 Fall 2014 Lectures